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AFSC 2013 Publications List

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ALLEN, B. M., and R. P. ANGLISS.
  2013. Alaska marine mammal stock assessments, 2012. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-245, 282 p.  Online. (.pdf, 11 MB).

BABIJ, E., P. NIEMEIER, B. HAYUM, A. HIMES-CORNELL, A. HOLLOWED, P. LITTLE, M. ORBACH, and E. PIDGEON.
  2013. International implications of climate change, p. 119-139. In R. Griffis, and J. Howard, (editors), Oceans and Marine Resources in a Changing Climate: A Technical Input to the 2013 National Climate Assessment. Island Press: Washington, D.C.

BAKER, C. S., D. STEEL, J. CALAMBOKIDIS, E. FALCONE, U. GONZALEZ-PERAL, J. BARLOW, A. M. BURDIN, P. J. CLAPHAM, J. K. B. FORD, C. M. GABRIELE, D. MATTILA, L. ROJAS-BRACHO, J. M. STRALEY, B. L. TAYLOR, J. URBAN, P. R. WADE, D. WELLER, B. H. WITTEVEEN, and M. YAMAGUCHI.
  2013. Strong maternal fidelity and natal philopatry shape genetic structure in North Pacific humpback whales. Mar. Ecol. Prog. Ser. 494:291-306.

BARBEAUX, S. J., J. K. HORNE, and M. W. DORN.
  2013. Characterizing walleye pollock (Theragra chalcogramma) winter distribution from opportunistic acoustic data. ICES J. Mar. Sci. 70:1162-1173.

BAUMGARTNER, M. F., N. S. J. LYSIAK, H. CARTER ESCH, A. N. ZERBINI, C. L. BERCHOK, and P. J. CLAPHAM.
  2013. Associations between North Pacific right whales and their zooplanktonic prey in the southeastern Bering Sea. Mar. Ecol. Prog. Ser. 490:267-284.

BLACK, B. A., M. E. MATTA, T. E. HELSER, and T. K. WILDERBUER.
  2013. Otolith biochronologies as multidecadal indicators of body size anomalies in yellowfin sole (Limanda aspera). Fish. Oceanogr. 22:523-532.http://dx.doi.org/10.1111/fog.12036

BOVENG, P. L., J. L. BENGTSON, M. F. CAMERON, S. P. DAHLE, E. A. LOGERWELL, J. M. LONDON,
J. E. OVERLAND, J. T. STERLING, D. E. STEVENSON, B. L. TAYLOR, and H. L. ZIEL.
  2013. Status review of the ribbon seal (Histriophoca fasciata). U. S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-255, 174 p.  Online. (.pdf, 9.11 MB).

BREIWICK, J. M.
  2013. North Pacific marine mammal bycatch estimation methodology and results, 2007-2011. U. S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-260, 40 p.  Online. (.pdf, 817 KB).

BRESLOW, S., D. HOLLAND, P. LEVIN, K. NORMAN, M. POE, C. THOMSON, R. BARNEA, P. DALTON, N. DOLSAK, C. GREENE, K. HOELTING, S. KASPERSKI, R. KOSAKA, D. LADD, A. MAMULA , S. MILLER, B. SOJKA, C. SPEIR, S. STEINBECK, and N. TOLIMIERI.
  2013. Human dimensions of the CCIEA. In P. S. Levin, B. K. Wells, and M. B. Sheer, (editors), California Current Integrated Ecosystem Assessment: Phase III Report 2013.  Online. (.pdf, 1.37 MB).

BROWMAN, H. I., S. DUPONT, J. HAVENHAND, L. ROBBINS, M. BEMAN, C. DUARTE, M. FINE, J. H. FOSSÅ, J. HALL-SPENCER, P. HALLOCK-MULLER, T. P. HURST, D. IGLESIAS-RODRIGUEZ, P. KNORR, H. KURIHARA, J. LISLE, C. MANNO, S. McCOY, F. MELZNER, P. MUNDAY, H-O. PÖRTNER, J. RIES, D. ROBERT, J. RUNGE, D. SCOTT, H. R. SKJOLDAL, K. SUZUKI, F. THINGSTAD, and T. WOOTTON.
  2013. Biological responses to ocean acidification, p. 37-54. In AMAP, 2013. AMAP Assessment 2013: Arctic Ocean Acidification. Arctic Monitoring and Assessment Programme (AMAP), Oslo, Norway. viii + 99 p.

BURNS, D., L. BROOKS, P. CLAPHAM, and P. HARRISON.
  2013. Between-year synchrony in migratory timing of individual humpback whales, Megaptera novaeangliae. Mar. Mammal Sci. 29(1):228-235.

CASTELLOTE, M., R. H. LEENEY, G. O'CORRY-CROWE, R. LAUHAKANGAS, K. M. KOVACS, W. LUCEY, V. KRASNOVA, C. LYDERSEN, K. M. STAFFORD, and R. BELIKOV.
  2013. Monitoring white whales (Delphinapterus leucas) with echolocation loggers. Polar Biol. 36:493-509.

CHRISTMAN, C. L., J. J. CITTA, L. T. QUAKENBUSH, J. T. CLARKE, B. K. RONE, R. A. SHEA, M. C. FERGUSON, and M. P. HEIDE-JØRGENSEN.
  2013. Presence and behavior of bowhead whales (Balaena mysticetus) in the Alaskan Beaufort Sea in July 2011. Polar Biol. 36:1851–1856.

CLAPHAM, P., and C. BAXTER.
  2013. Winged leviathan: the story of the humpback whale. Colin Baxter Photography, Ltd., Grantown-on-Spey, Scotland. 192 p.

CLARKE, J. T., C. L. CHRISTMAN, A. A. BROWER, and M. C. FERGUSON.
  2013. Distribution and relative abundance of marine mammals in the northeastern Chukchi and Western Beaufort Seas, 2012. Annual Report, OCS Study BOEM 2013-00117. Natl. Mar. Mammal Lab., Alaska Fish. Sci. Cent., NMFS, NOAA, 7600 Sand Point Way NE, F/AKC3, Seattle, WA 98115-6349.

CLAUSEN, D. M., and C. J. RODGVELLER.
  2013. Deep-water longline experimental survey for giant grenadier, Pacific grenadier, and sablefish in the western Gulf of Alaska. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-247, 30 p.  Online. (.pdf, 3.97 MB).

CLEMENT, J. P., J. L. BENGTSON, and B. P. KELLY.
  2013. Managing for the future in a rapidly changing Arctic. A report to the President. Interagency Working Group on Coordination of Domestic Energy Development and Permitting in Alaska. (D. J. Hayes, Chair), Washington, D.C., 59 p.  Online. (.pdf, 13.6 MB).

COLLIER, B. A., S. L. FARRELL, A. M. LONG, A. J. CAMPOMIZZI, K. B. HAYS, J. L. LAAKE, M. L. MORRISON, and R. N. WILKINS.
  2013. Modeling spatially explicit densities of endangered avian species in a heterogeneous landscape. Auk 130:666-676.

CONN, P. B., B. T. McCLINTOCK, M. F. CAMERON, D. S. JOHNSON, E. E. MORELAND, and P. L. BOVENG.
  2013 Accommodating species identification errors in transect surveys. Ecology 94:2607-2618.

CONN, P. B., and G. K. SILBER.
  2013. Vessel speed restrictions reduce risk of collision-related mortality for North Atlantic right whales. Ecosphere 4(4):43. (http://dx.doi.org/10.1890/ES13-00004.1).

COOKE, S. J., J. D. MIDWOOD, J. D. THIEM, P. KLIMLEY, M. C. LUCAS, E. B. THORSTAD, J. EILER, C. HOLBROOK, and B. C. EBNER.
  2013. Tracking animals in freshwater with electronic tags: Past, present, and future. Anim. Biotelemetry 1:5.  Online. (.pdf, 411 KB).

COOPER, D. W., J. T. DUFFY-ANDERSON, W. T. STOCKHAUSEN, and W. CHENG.
  2013. Modeled connectivity between northern rock sole (Lepidopsetta polyxystra) spawning and nursery areas in the eastern Bering Sea. J. Sea Res. 84:2-12.

COPEMAN, L. A., B. J. LAUREL, and C. C. PARRISH.
  2013. Effect of temperature and tissue type on fatty acid signatures of two species of North Pacific juvenile gadids: a laboratory feeding study. J. Exp. Mar. Biol. Ecol. 448:188-196.

DELARUE, J., B. MARTIN, D. HANNAY, and C. L. BERCHOK.
  2013. Acoustic occurrence and affiliation of fin whales detected in the northeastern Chukchi Sea, July to October 2007-10. Arctic 66:159-172.

De FOREST, L. G., A. C. MATARESE, and S. REMPLE.
  2013. Larval descriptions of two eastern North Pacific Cryptacanthodid species: Cryptacanthodes aleutensis and Cryptacanthodes giganteus. Northwest. Nat. 94:89-102.

De ROBERTIS, A., and HANDEGARD, N. O.
  2013. Fish avoidance of research vessels and the efficacy of noise-reduced vessels: a review. ICES J. Mar. Sci. 70:34–45.

De ROBERTIS, A., C. D. WILSON, S. R. FURNISH, and P. H. DAHL.
  2013. Underwater radiated noise measurements of a noise-reduced fisheries research vessel. ICES J. Mar. Sci. 70:480-484.

DRUMM, D. T., and R. N. BAMBER.
  2013. A new species of Fageapseudes (Crustacea: Peracarida: Tanaidacea) from California, with comments on the systematics of the family Apseudidae Zootaxa. 3701:437-446.

DRUMM, D. T., R. R. LAUTH, R. N. CLARK, and J. W. ORR.
  2013. Northern range extensions and biological notes for three decapods in the eastern North Pacific. Crustaceana 86:1572-1585.

DUFFY-ANDERSON, J. T., D. M. BLOOD, W. CHENG, L. CIANNELLI, A. C. MATARESE, D. SOHN, T. C. VANCE, and C. VESTFALS.
  2013. Combining field observations and modeling approaches to examine Greenland halibut (Reinhardtius hippoglossoides) early life ecology in the southeastern Bering Sea. J. Sea Res. 75:96-109.

DUNCAN, C., T. GOLDSTEIN, C. HEARNE, T. GELATT, and T. SPRAKER.
  2013. Novel polyomaviral infection in the placenta of a northern fur seal (Callorhinus ursinus) on the Pribilof Islands, Alaska, USA. J. Wildl. Dis. 49:163-167.

DUNCAN, C., K. SAVAGE, M. WILLIAMS, B. DICKERSON, A. V. KONDAS, K. A. FITZPATRICK, J. L. GUERRERO, T. SPRAKER, and G. J. KERSH.
  2013. Multiple strains of Coxiella burnetii are present in the environment of St. Paul Island, Alaska. Transbound. Emerg. Dis. 60:345-350.

ECHAVE, K., D. H. HANSELMAN, and N. E. MALONEY.
  2013. Report to industry on the Alaska sablefish tag program, 1972-2012. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-254, 47 p.  Online. (.pdf, 7.55 MB).

ECHAVE, K., C. RODGVELLER, and S. K. SHOTWELL.
  2013. Calculation of the geographic sizes used to create population indices for the Alaska Fisheries Science Center longline survey. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-253, 93 p.  Online. (.pdf, 7.55 MB).

EILER, J. H., T. M. GROTHUES, J. A. DOBARRO, and M. M. MASUDA.
  2013. Comparing autonomous underwater vehicle (AUV) and vessel-based tracking performance for locating acoustically tagged fish. Mar. Fish. Rev. 75(4):27-42.  Online. (.pdf, 2.67 MB).

EZER, T., J. R. ASHFORD, C. M. JONES, B. A. MAHONEY, and R. C. HOBBS.
  2013. Physical-biological interactions in a subarctic estuary: How do environmental and physical factors impact the movement and survival of beluga whales in Cook Inlet, Alaska? J. Mar. Syst. 111:120-129.

FELTHOVEN, R., and S. KASPERSKI.
  2013. Socioeconomic indicators for United States fisheries and fishing communities. PICES Press 21(2):20-23.

FERGUSON, M. C., and J. T. CLARKE.
  2013. Estimates of detection probability for BWASP bowhead whale, gray whale, and beluga sightings collected from Twin Otter and Aero Commander aircraft,1989 to 2007 and 2008 to 2011. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-261, 52 p.  Online. (.pdf, 906 KB).

FIELD, J. C., C. ELLIGER, K. BALTZ, G. E. GILLESPIE, W. F. GILLY, R. I. RUIZ-COOLEY, D. PEARSE, J. S. STEWART, W. MATSUBU, and W. A. WALKER.
  2013. Foraging ecology and movement patterns of jumbo squid (Dosidicus gigas) in the California Current System. Deep-Sea Res. II 95:37-51.

FISH, F. E., K. T. GOETZ, D. J. RUGH, and L. Vate BRATTSTROM.
  2013. Hydrodynamic patterns associated with echelon formation swimming by feeding bowhead whales (Balaena mysticetus). Mar. Mammal Sci. 29:E498-E507.

FOWLER, C. W., A. BELGRANO, and M. CASINI.
  2013. Holistic fisheries management: Combining macroecology, ecology, and evolutionary biology. Mar. Fish. Rev. 75:1-36.  Online. (.pdf, 11.2 MB).

FOY, R. J., and C. E. ARMISTEAD.
  2013. The 2012 eastern Bering Sea continental shelf bottom trawl survey: Results for commercial crab species. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-242, 147 p.  Online (.pdf, 22.9 MB).

FRITZ, L., K. SWEENEY, D. JOHNSON, M. LYNN, T. GELATT, and J. GILPATRICK.
  2013. Aerial and ship-based surveys of Steller sea lions (Eumetopias jubatus) conducted in Alaska in June-July 2008 through 2012, and an update on the status and trend of the western distinct population segment in Alaska. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-251, 91 p.  Online (.pdf, 2.68 MB).

GARLAND, E. C., J. GEDAMKE, M. L. REKDAHL, M. J. NOAD, C. GARRIGUE, and N. GALES.
  2013. Humpback whale song on the southern ocean feeding grounds: Implications for cultural transmission. PLoS One 8(11):e79422.  Online. (.pdf, 4.62 MB).

GARLAND, E. C., M. J. NOAD, A. W. GOLDIZEN, M. S. LILLEY, M. L. REKDAHL, C. GARRIGUE, R. CONSTANTINE, N. D. HAUSER, M. M. POOLE, and J. ROBBINS.
  2013. Quantifying humpback whale song sequences to understand the dynamics of song exchange at the ocean basin scale. J. Acoust. Soc. Am. 133:560-569.

GARVIN, M. R., C. M. KONDZELA, P. C. MARTIN, B. FINNEY, J. GUYON, W. D. TEMPLIN, N. DECOVICH, S. GILK-BAUMER, and A. J. GHARRETT.
  2013. Recent physical connections may explain weak genetic structure in western Alaskan chum salmon (Oncorhynchus keta) populations. Ecol. Evol. doi: 10.1002/ece3.628.  Online. (.pdf, 2.56 MB).

GURARIE, E., and O. OVASKAINEN.
  2013. Towards a general formalization of encounter rates in ecology. Theor. Ecol. 6:189-202.

GUTHRIE, C. M. III, H. T. NGUYEN, and J. R. GUYON.
  2013. Genetic stock composition analysis of Chinook salmon bycatch samples from the 2011 Bering Sea and Gulf of Alaska trawl fisheries. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-244, 28 p.  Online (.pdf, 588 KB).

HALL, A. G., J. B. McNEILL, P. B. CONN, E. DAVENPORT, and A. A. HOHN.
  2013. Seasonal co-occurrence of sea turtles, bottlenose dolphins, and commercial gill nets in southern Pamlico and northern Core Sounds, and adjacent coastal waters of North Carolina, USA. Endang. Species Res. 22:235-249.

HALTUCH, M. A., O. S. HAMEL, K. R. PINER, P. McDONALD, C. R. KASTELLE, and J. C. FIELD.
  2013. A California Current bomb radiocarbon reference chronology and petrale sole (Eopsetta jordani) age validation. Can. J. Fish. Aquat. Sci. 70:22-31.

HELMUTH, B., L. PETES, E. BABIJ, E. DUFFY, D. FAUQUIER, M. GRAHAM, A. HOLLOWED, J. HOWARD, D. HUTCHINS, L. JEWETT, N. KNOWLTON, T. KRISTIANSEN, T. ROWLES, E. SANFORD, C. THORNBER, and C. WILSON.
  2013. Impacts of climate change on marine organisms, p. 35-63. In R. Griffis, and J. Howard, (editors), Oceans and Marine Resources in a Changing Climate: A Technical Input to the 2013 National Climate Assessment. Island Press: Washington, D.C.

HERMANN, A. J., G. A. GIBSON, N. A. BOND, E. N. CURCHITSER, K. HEDSTROM, W. CHENG, M. WANG, P. J. STABENO, L. EISNER, and K. D. CIECIEL.
  2013. A multivariate analysis of observed and modeled biophysical variability on the Bering Sea shelf: Multidecadal hindcasts (1970–2009) and forecasts (2010–2040). Deep-Sea Res. II 94, 121-139.

HILTON, E. J., and D. E. STEVENSON.
  2013. Osteology of the prowfish, Zaprora silenus (Perciformes: Zoarcoidei: Zaproridae). J. Morphol. 274:1143-1163.

HIMES-CORNELL, A., K. HOELTING, C. MAGUIRE, L. MUNGER-LITTLE, J. LEE, J. FISK, R. FELTHOVEN, C. GELLER, and P. LITTLE.
  2013. Community profiles for North Pacific fisheries - Alaska. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-259 (Volumes 1-12).  Online (pdf., 41 MB  Note large file size).

HIMES-CORNELL, A., M. ORBACH, S. ALLEN, G. AUAD, M. BOATMAN, T. CLAY, P. M. CLAY, S. HERRICK, D. KOTOWICZ, P. LITTLE, C. LOPEZ, P. LORING, P. NIEMEIER, K. NORMAN, L. PFEIFFER, M. PLUMMER, M. RUST, M. SINGER, and C. SPEIRS.
  2013. Impacts of climate change on human uses of the ocean, p. 64-118. In R. Griffis, and J. Howard, (eds), Oceans and Marine Resources in a Changing Climate: a Technical Input to the 2013 National Climate Assessment. Island Press: Washington, D.C.

HOBBS, R. C.
  2013. Detecting changes in population trends for Cook Inlet beluga whales (Delphinapterus leucas) using alternative schedules for aerial surveys. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-252, 25 p.  Online. (.pdf, 634 KB).

HOFF, G. R.
  2013. Results of the 2012 eastern Bering Sea upper continental slope survey of groundfish and invertebrate resources. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-258, 268 p.  Online. (.pdf, 22.9 MB).

HOLLAND, D. S., and S. KASPERSKI.
  2013. Fishery income diversification and risk for fishermen and fishing communities of the U.S. West Coast and Alaska – updated to 2012, Appendix HD1, Appendix to: Human dimensions of the CCIEA. In P. S. Levin, B. K. Wells, and M. B. Sheer (editors), California Current Integrated Ecosystem Assessment: Phase III Report 2013.  Online. (.pdf, 916 KB).

HOLLOWED, A. B., M. BARANGE, R. BEAMISH, K. BRANDER, K. COCHRANE, K. DRINKWATER, M. FOREMAN, J. HARE, J. HOLT, S-I. ITO, S. KIM, J. KING, H. LOENG, B. MACKENZIE, F. MUETER, T. OKEY, M. A. PECK, V. RADCHENKO, J. RICE, M. SCHIRRIPA, A. YATSU, and Y. YAMANAKA.
  2013. Projected impacts of climate change on marine fish and fisheries. ICES J. Mar. Sci. 70:1023-103.

HOLLOWED, A. B., E. CURCHITSER, C. STOCK, and C. I. ZHANG.
  2013. Trade-offs associated with different modeling approaches for assessment of fish and shellfish responses to climate change. Climatic Change 119:111-129.

HOLLOWED, A. B., B. PLANQUE, and H. LOENG.
  2013. Potential movement of fish and shellfish stocks from the sub-Arctic to the Arctic Ocean. Fish. Oceanogr. 22:355–370.

HOOTEN, M. B., E. M. HANKS, D. S. JOHNSON, and M. W. ALLDREDGE.
  2013. Reconciling resource utilization and resource selection functions. J. Anim. Ecol. 82(6):1146-1154.

HOWARD, J., E. BABIJ, R. GRIFFIS, B. HELMUTH, A. HIMES-CORNELL, P. NIEMIER, M. ORBACH, L. PETES, S. ALLEN, G. AUAD, R. BEARD, M. BOATMAN, N. BOND, T. BOYER, D. BROWN, P. CLAY, K. CRANE, S. CROSS, M. DALTON, J. DIAMOND, R. DIAZ, E. DUFFY, D. FAUQUIER, W. FISHER, M. GRAHAM, B. HALPERN, L. HANSEN, B. HAYUM, S. HERRICK, A. HOLLOWED, D. HUTCHINS, E. JEWETT, D. JIN, N. KNOWLTON, D. KOTOWICZ, T. KRISTIANSEN, P. LITTLE, C. LOPEZ, P. LORING, R. LUMPKIN, A. MACE, K. MENGERINK, J. R. MORRISON, J. MURRAY, K. NORMAN, J. O'DONNELL, J. OVERLAND, R. PARSONS, N. PETTIGREW, L. PFEIFFER, E. PIDGEON, M. PLUMMER, J. POLOVINA, J. QUINTRELL, T. ROWLES, J. RUNGE, M. RUST, E. SANFORD, U. SEND, M. SINGER, C. SPEIR, D. STANITSKI, C. THORNBER, C. WILSON, and Y. XUE.
  2013. Oceans and marine resources in a changing climate, p. 71-192. In R. N. Hughes, D. J. Hughes, and I. P. Smith (editors). Oceanography and Marine Biology: an Annual Review, Vol. 51. CRC Press.

HUFF, L. C., and R. A. McCONNAUGHEY.
  2013. Calibration schema for a long-range, fishery-research side scan sonar. In An Ocean in Common. Proceedings, MTS/IEEE Oceans - San Diego, 23-27 Sept. 2013, 5 p.  Online. (.pdf, 366 KB).

HULSON, P.-J. F., T. J. QUINN, D. HANSELMAN, and J. N. IANELLI.
  2013. Spatial modeling of Bering Sea walleye pollock with integrated age-structured assessment models in a changing environment. Can. J. Fish. Aquat. Sci. 70:1402-1416.

HUNT, G. L., A. L. BLANCHARD, P. BOVENG, P. DALPADADO, K. F. DRINKWATER, L. EISNER, R. R. HOPCROFT, K. M. KOVACS, B. L. NORCROSS, P. RENAUD, M. REIGSTAD, M. RENNER, H. R. SKJOLDAL, A. WHITEHOUSE, and R. A. WOODGATE.
  2013. The Barents and Chukchi seas: Comparison of two Arctic shelf ecosystems. J. Mar. Sys. 109-110:43-68.

HUNTINGTON, HP, N. M. BRAEM, C. L. BROWN, E. HUNN, T. M. KRIEG, P. LESTENKOF, G. NOONGWOOK, J. SEPEZ, M. F. SIGLER, F. K. WIESE, and P. ZAVADIL.
  2013. Local and traditional knowledge regarding the Bering Sea ecosystem: Selected results from five indigenous communities. Deep-Sea Res. II.94:323-332. doi:10.1016/j.dsr2.2013.04.025.

HURST, T. P., E. R. FERNANDEZ, and J. T. MATHIS.
  2013. Effects of ocean acidification on hatch size and larval growth of walleye pollock (Theragra chalcogramma). ICES J. Mar. Sci. 70(4):812-822.

JEMISON, L. A., G. W. PENDLETON, L. W. FRITZ, K. K. HASTINGS, J. M. MANISCALCO, A. W. TRITES, and T. S. GELATT.
  2013. Inter-population movements of Steller sea lions in Alaska with implications for population separation. PLoS One 8(8).  Online. (.pdf, 639 KB).

JOHNSON, D. S., M. B. HOOTEN, and C. E. KUHN.
  2013. Estimating animal resource selection from telemetry data using point process models. J. Anim. Ecol. 82:1155-1164.

JOHNSON, D. S., P. B. CONN, M. B. HOOTEN, J. C. RAY, and B. A. POND.
  2013. Spatial occupancy models for large data sets. Ecology 94:801-808.

JOHNSON, D. S., R. R. REAM, R. G. TOWELL, M. T. WILLIAMS, and J. D. L. GUERRERO.
  2013. Bayesian clustering of animal abundance trends for inference and dimension reduction. J. Agric. Biol. Environ. Stat. 18:299-313.

KAI, Y., N. MUTO, T. NODA, J. W. ORR, and T. NAKABO.
  2013. First record of the rockfish Sebastes melanops from the western North Pacific, with comments on its synonymy (Osteichthyes: Scorpaenoidei: Sebastidae). Species Divers. 18:175-182.

KASPERSKI, S., and D. S. HOLLAND.
  2013. Income diversification and risk for fishermen. PNAS 110:2076-2081.

KONDZELA, C. M., C. T. MARVIN, S. C. VULSTEK, H. T. NGUYEN, and J. R. GUYON.
  2013. Genetic stock composition analysis of chum salmon bycatch samples from the 2011 Bering Sea walleye pollock trawl fishery. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-243, 39 p.  Online (.pdf, 812 KB).

KOTWICKI, S., A. De ROBERTIS, J. N. IANELLI, A. E. PUNT, and J. K. HORNE.
  2013. Combining bottom trawl and acoustic data to model acoustic dead zone correction and bottom trawl efficiency parameters for semi-pelagic species. Can. J. Fish. Aquat. Sci. 70:208-219.

KOTWICKI, S., and R. LAUTH.
  2013. Detecting temporal trends and environmentally-driven changes in the spatial distribution of bottom fishes and crabs on the eastern Bering Sea shelf. Deep Sea Res. II 94:231-243.

LAAKE, J. L., D. S. JOHNSON, and P. B. CONN.
  2013. marked: an R package for maximum likelihood and Markov Chain Monte Carlo analysis of capture–recapture data. Methods Ecol. Evol. 4:885–890.

LANDER, M. E., B. S. FADELY, T. S. GELATT, L. D. REA, and T. R. LOUGHLIN.
  2013. Serum chemistry reference ranges for Steller sea lion (Eumetopias jubatus) pups from Alaska: Stock differentiation and comparisons within a North Pacific sentinel species. EcoHealth 10:376-393.

LANDER, M. E., L. W. FRITZ, D. S. JOHNSON, and M. G. LOGSDON.
  2013. Population trends of Steller sea lions (Eumetopias jubatus) with respect to remote sensing measures of chlorophyll-a in critical habitat. Mar. Biol. 160:195-209.

LARSON, D. M., and D. K. LEW.
  2013. How do harvest rates affect angler trip patterns? Mar. Resour. Econ. 28:155-173.

LARSON, W. A., F. M. UTTER, K. W. MYERS, W. D. TEMPLIN, J. E. SEEB, C. M. GUTHRIE III, A. V. BUGAEV, and L. W. SEEB.
  2013. Single-nucleotide polymorphisms reveal distribution and migration of Chinook salmon (Oncorhynchus tshawytscha) in the Bering Sea and North Pacific Ocean. Can. J. Fish. Aquat. Sci. 70:128-141.

LAUTH, R. R., and D. G. NICHOL.
  2013. Results of the 2012 eastern Bering Sea continental shelf bottom trawl survey of groundfish and invertebrate resources. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-256, 162 p.  Online (.pdf, 47.3 MB)  Note large file size.

LEHNERT, H., and R. P. STONE.
  2013. Four new species of Haplosclerida (Porifera, Demospongiae) from the Aleutian Islands, Alaska. Zootaxa 3700:573–582.

LONG, W. C., A. J. SELLERS, and A. H. HINES.
  2013. Mechanism by which coarse woody debris affects predation and community structure in Chesapeake Bay. J. Exp. Mar. Biol. Ecol. 446:297-305.

LONG, W. C., K. M. SWINEY, and R. J. FOY.
  2013. Effects of ocean acidification on the embryos and larvae of red king crab, Paralithodes camtschaticus. Mar. Pollut. Bull. 69:38-47.

LONG, W. C., K. M. SWINEY, C. HARRIS, H. N. PAGE, and R. J. FOY.
  2013. Effects of ocean acidification on juvenile red king crab (Paralithodes camtschaticus) and Tanner crab (Chionoecetes bairdi) growth, condition, calcification, and survival. PLoS ONE 8(4): e60959. doi:10.1371/journal.pone.0060959.  Online.

LUXA, K., and A. ACEVEDO-GUTIERREZ.
  2013. Food habits of harbor seals (Phoca vitulina) in two estuaries in the central Salish Sea. Aquat. Mamm. 39:10-22.

MacINTYRE, K. Q., K. M. STAFFORD, C. L. BERCHOK, and P. L. BOVENG.
  2013. Year-round acoustic detection of bearded seals (Erignathus barbatus) in the Beaufort Sea relative to changing environmental conditions, 2008-2010. Polar Biol. 36:1161-1173.

MASELKO, J., G. BISHOP, and P. MURPHY.
  2013. Ghost fishing in the Southeast Alaska commercial Dungeness crab fishery. N. Am. J. Fish. Manage. 33:422-431.

MASLENIKOV, K. P., J. W. ORR, and D. E. STEVENSON.
  2013. Range extensions and significant distributional records for eighty-two species of fishes in Alaskan marine waters. Northwest. Nat. 94:1-21.

MATARESE, A. C., D. M. BLOOD, and M. S. BUSBY.
  2013. Guide to the identification of larval and early juvenile pricklebacks (Perciformes: Zoarcoidei: Stichaeidae) in the northeastern Pacific Ocean and Bering Sea. NOAA Professional Paper NMFS 15, 96 p.  Online. (.pdf, 16.2 MB).

MATTA, M. E., I. J. ORLAND, T. USHIKUBO, T. E. HELSER, B. A. BLACK, and J. W. VALLEY.
  2013. Otolith oxygen isotopes measured by high-precision secondary ion mass spectrometry reflect life history of a yellowfin sole (Limanda aspera). Rapid Commun. Mass Spectrom. 27:691-699.

MAXWELL, S. M., E. L. HAZEN, S. J. BOGRAD, B. S. HALPERN, G. A. BREED, B. NICKEL, N. M. TEUTSCHEL, L. B. CROWDER, S. BENSON, P. H. DUTTON, H. BAILEY, M. A. KAPPES, C. E. KUHN, M. J. WEISE, B. MATE, S. A. SHAFFER, J. L. HASSRICK, R. W. HENRY, L. IRVINE, B. I. McDONALD, P. W. ROBINSON, B. A. BLOCK, and D. P. COSTA.
  2013. Cumulative human impacts on marine predators. Nat. Commun. 4:2688.

McCLINTOCK, B. T., D. J. F. RUSSELL, J. MATTHIOPOULOS, and R. KING.
  2013. Combining individual animal movement and ancillary biotelemetry data to investigate population-level activity budgets. Ecology 94:838-849.

McCLINTOCK, B. T., P. B. CONN, R. S. ALONSO, and K. R. CROOKS.
  2013. Integrated modeling of bilateral photo-identification data in mark-recapture analyses. Ecology 94:1464-1471.

MEIXELL, B. W., M. S. LINDBERG, P. B. CONN, C. P. DAU, J. E. SARVIS, and K. M. SOWL.
  2013. Age-specific survival of tundra swans on the lower Alaska Peninsula. Condor 115:280-289.

MELIN, S. R., M. HAULENA, W. Van BONN, M. J. TENNIS, R. F. BROWN, and J. D. HARRIS. 2013. Reversible immobilization of free-ranging adult male California sea lions (Zalophus californianus). Mar. Mammal Sci. 29:E529-E536.

MINOR, C., G. J. KERSH, T. GELATT, A. V. KONDAS, K. L. PABILONIA, C. B. WELLER, B. R. DICKERSON, and C. G. DUNCAN.
  2013. Coxiella burnetii in northern fur seals and Steller sea lions of Alaska. J. Wildl. Dis. 49:441-446.

MIZROCH, S. A., and D. W. RICE.
  2013. Ocean nomads: Distribution and movements of sperm whales in the North Pacific shown by whaling data and discovery marks. Mar. Mamm. Sci. 29(2):E136-E165.

NADLER, S. A., E. T. LYONS, C. PAGAN, D. HYMAN, E. E. LEWIS, K. BECKMEN, C. M. BELL, A. CASTINEL, R. L. DELONG, P. J. DUIGNAN, C. FARINPOUR, K. B. HUNTINGTON, T. KUIKEN, D. MORGADES, S. NAEM, R. NORMAN, C. PARKER, P. RAMOS, T. R. SPRAKER, and B. BERON-VERA.
  2013. Molecular systematics of pinniped hookworms (Nematoda: Uncinaria): Species delimitation, host associations and host-induced morphometric variation. Int. J. Parasitol. 43:1119-1132.

NICHOL, D. G., S. KOTWICKI, and M. ZIMMERMANN.
  2013. Diel vertical migration of adult Pacific cod Gadus macrocephalus in Alaska. J. Fish Biol. 83:170-189.

NORMAN, S. A., R. C. HOBBS, S. WUERTZ, A. MELLI, L. A. BECKETT, N. CHOUICHA, A. KUNDU, and W. A. MILLER.
  2013. Fecal pathogen pollution: Sources and patterns in water and sediment samples from the upper Cook Inlet, Alaska ecosystem. Environ. Sci.: Processes Impacts 15:1041-1051.

ORR, A. J., S. R. MELIN, J. D. HARRIS, and R. L. DELONG.
  2013. Status of the northern fur seals population at San Miguel Island, California during 2012, p. 51-70. In J. W. TESTA (editor), Fur seal investigations, 2012. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-257, 90 p.

PEACOCK, E., M. K. TAYLOR, J. LAAKE, and I. STIRLING.
  2013. Population ecology of polar bears in Davis Strait, Canada and Greenland. J. Wildl. Manage. 77:463-476.

PARSONS, K. M., J. W. DURBAN, A. M. BURDIN, V. N. BURKANOV, R. L. PITMAN, J. BARLOW, L. G. BARRETT-LENNARD, R. G. LEDUC, K. M. ROBERTSON, C. O. MATKIN, and P. R. WADE.
  2013. Geographic patterns of genetic differentiation among killer whales in the northern North Pacific. J. Heredity 104:737-754.

PETERSON, E. E., J. M. Ver HOEF, D. J. ISAAK, J. A. FALKE, M-J. FORTIN, C. E. JORDAN, K. McNYSET, P. MONESTIEZ, A. S. RUESCH, A. SENGUPTA, N. SOM, E. A. STEEL, D. M. THEOBALD, C. E. TORGERSEN, and S. J. WENGER.
  2013. Modelling dendritic ecological networks in space: an integrated network perspective. Ecol. Lett. 16:707-719.

PETERSON, M. J., F. MUETER, D. HANSELMAN, C. LUNSFORD, C. MATKIN, and H. FEARNBACH. 2013. Killer whale (Orcinus orca) depredation effects on catch rates of six groundfish species: Implications for commercial longline fisheries in Alaska. ICES J. Mar. Sci. 70:1220-1232.

PIENAAR, E. F., D. K. LEW, and K. WALLMO.
  2013. Are environmental attitudes influenced by survey context? An investigation of the context dependency of the New Ecological Paradigm (NEP) Scale. Soc. Sci. Res. 42:1542-1554.

PINCHUK, A. I., K. O. COYLE, E. V. FARLEY, and H. M. RENN.
  2013. Emergence of the Arctic Themisto libellula (Amphipoda: Hyperiidae) on the southeastern Bering Sea shelf as a result of the recent cooling, and its potential impact on the pelagic food web. ICES J. Mar. Sci.70:1244-1254.

PORTER, S. M., and K. M. BAILEY.
  2013. Using measurements of muscle cell nuclear RNA with flow cytometry to improve assessment of larval condition of walleye pollock (Gadus chalcogrammus). Fish. Bull., U.S. 111:337-351.  Online. (.pdf, 1 MB).

RAND, K. M., A. WHITEHOUSE, E. A. LOGERWELL, E. AHGEAK, R. HIBPSHMAN, and S. PARKER-STETTER.
  2013. The diets of polar cod (Boreogadus saida) from August 2008 in the U.S. Beaufort Sea. Polar Biol. 36:907–912.

REA, L. D., J. M. CASTELLINI, L. CORREA, B. S. FADELY, and T. M. O'HARA.
  2013. Maternal Steller sea lion diets elevate fetal mercury concentrations in an area of population decline. Sci. Total Environ. 454-455:277-282.

REGAN, T. J., B. L. TAYLOR, G. G. THOMPSON, J. F. COCHRANE, K. RALLS, M. C. RUNGE, and R. MERRICK.
  2013. Testing decision rules for categorizing species' extinction risk to help develop quantitative listing criteria for the U.S. Endangered Species Act. Conserv. Biol. 27:821-831.

REISWIG, H. M., and R. P. STONE.
  2013. New glass sponges (Porifera: Hexactinellida) from deep waters of the central Aleutian Islands, Alaska. Zootaxa 3628:001–064.

ROSE, C. S., C. F. HAMMOND, A. W. STONER, J. E. MUNK, and J. R. GAUVIN.
  2013. Quantification and reduction of unobserved mortality rates for snow, southern Tanner, and red king crabs (Chionoecetes opilio, C. bairdi, and Paralithodes camtschaticus) after encounters with trawls on the seafloor. Fish. Bull., U.S. 111:42-53.  Online. (.pdf, 962 KB).

RUCKELSHAUS, M., S. C. DONEY, H. M. GALINDO, J. P. BARRY, F. CHAN, J. E. DUFFY, C. A. ENGLISH, S. D. GAINES, J. M. GREBMEIER, A. B. HOLLOWED, N. KNOWLTON, J. POLOVINA, N. N. RABALAIS, W. J. SYDEMAN, and L. D. TALLEY.
  2013. Securing ocean benefits for society in the face of climate change. Mar. Policy 40:154-15.

SALINGER, M. J., J. D. BELL, K. EVANS, A. J. HOBDAY, V. ALLAIN, K. BRANDER, P. DEXTER, D. E. HARRISON, A. B. HOLLOWED, B. LEE, and R. STEFANSKI.
  2013. Climate and oceanic fisheries: Recent observations and projections and future needs. Climatic Change 119:213-221.

SANCHIRICO, J. N., D. K. LEW, A. C. HAYNIE, D. M. KLING, and D. F. LAYTON.
  2013. Conservation values in marine ecosystem-based management. Mar. Policy 38:523–530.

SCHNIER, K. E., and R. G. FELTHOVEN.
  2013. Production efficiency and exit in rights-based fisheries. Land Econ. 89:538-557.

SEUNG, C. K., and D. K. LEW.
  2013. Accounting for variation in exogenous shocks in economic impact modeling. Ann. Reg. Sci. 51:711-730.

SHELDEN, K. E. W., D. J. RUGH, K. T. GOETZ, C. L. SIMS, L. Vate BRATTSTROM, J. A. MOCKLIN, B. A. MAHONEY, B. K. SMITH, and R. C. HOBBS.
  2013. Aerial surveys of beluga whales, Delphinapterus leucas, in Cook Inlet, Alaska, June 2005 to 2012. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-263, 122 p.  View Online. (.pdf 4.67 MB).

SINCLAIR, E. H., D. S. JOHNSON, T. K. ZEPPELIN, and T. S. GELATT.
  2013. Decadal variation in the diet of Western Stock Steller sea lions (Eumetopias jubatus). U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-248, 67 p.  Online (.pdf, 2.96 MB).

SMART, T. I., E. C. SIDDON, and J. T. DUFFY-ANDERSON.
  2013. Vertical distributions of the early life stages of walleye pollock (Theragra chalcogramma) in the Southeastern Bering Sea. Deep-Sea Res. II 94:201-210.

SMITH, J. N., P. H. RESSLER, and J. D. WARREN.
  2013. A distorted wave Born approximation target strength model for Bering Sea euphausiids. ICES J. Mar. Sci. 70:204-214.

SOLLMANN, R., B. GARDNER, A. W. PARSONS, J. J. STOCKING, B. T. McCLINTOCK, T. R. SIMONS, K. H. POLLOCK, and A. F. O'CONNELL.
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SOMERTON, D., S. GOODMAN, R. FOY, L. RUGOLO, and L. SLATER.
  2013. Growth per molt of snow crab in the eastern Bering Sea. North Am. J. Fish. Manage. 33:140-147.

SOMERTON, D. A., K. L. WEINBERG, and S. E. GOODMAN.
  2013. Catchability of snow crab (Chionoecetes opilio) by the eastern Bering Sea bottom trawl survey estimated using a catch comparison experiment. Can. J. Fish. Aquat. Sci. 70:1699-1708.  http://dx.doi.org/10.1139/cjfas-2013-0100.

SPENCER, P. D., and M. W. DORN.
  2013. Incorporation of weight-specific relative fecundity and maternal effects in larval survival into stock assessments. Fish. Res. 38:159-167.

STEVENSON, D. E., and KENALEY, C. P.
  2013. Revision of the manefish genera Caristius and Platyberyx (Teleostei: Percomorpha: Caristiidae), with descriptions of five new species. Copeia 3:415-434.

STONER, A. W., L. A. COPEMAN, and M. L. OTTMAR.
  2013. Molting, growth, and energetics of newly-settled blue king crab: Effects of temperature and comparisons with red king crab. J. Exp. Mar. Biol. Ecol. 442:10-21.

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  2013. Does maternal size affect red king crab, Paralithodes camtschaticus, embryo and larval quality? J. Crustac. Biol. 33:470-480.

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  2013. The effects of holding space on juvenile red king crab, Paralithodes camtschaticus (Tilesius, 1815), growth and survival. Aquaculture Res. 44:1007-1016.

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TENBRINK, T. T., and P. D. SPENCER.
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  2013. Demographic studies of the northern fur seals on the Pribilof Islands, Alaska, 2007-2012, p. 23-50. In J. W. TESTA (editor), Fur seal investigations, 2012. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-257, 90 p.

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WHITE, V. C., J. F. MORADO, L. M. CROSSON, B. VADOPALAS, and C. S. FRIEDMAN.
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WHITEHOUSE, G. A.
  2013. A preliminary mass-balance food web model of the eastern Chukchi Sea. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-262, 164 p.  Online. (.pdf, 1.2 MB).

WILDERBUER, T., W. STOCKHAUSEN, and N. BOND.
  2013. Updated analysis of flatfish recruitment response to climate variability and ocean conditions in the Eastern Bering Sea. Deep Sea Res. II 94:157-164.

WILSON, M. T., K. L. MIER, and C. M. JUMP.
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YANG, M-S., and C. YEUNG.
  2013. Habitat-associated diet of some flatfish in the southeastern Bering Sea. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-246,151 p.  Online (.pdf, 17.9 MB).

YEUNG, C., M-S. YANG, S. C. JEWETT, and A. S. NAIDU.
  2013. Polychaete assemblage as surrogate for prey availability in assessing southeastern Bering Sea flatfish habitat. J. Sea Res. 76:211-221.

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ZIMMERMANN, M., and J. L. BENSON.
  2013. Smooth sheets: How to work with them in a GIS to derive bathymetry, features and substrates. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-249, 52 p.  Online (.pdf, 6.95 MB).

ZIMMERMANN, M., M. M. PRESCOTT, and C. N. ROOPER.
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